DNA extension Version2 - Revision history

A.Plank: Category: Terms documentations

2023-01-09T10:34:26Z

← Older revision		Revision as of 12:34, 9 January 2023
Line 403:		Line 403:
	\|path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/SingleSequencings/SingleSequencing/SequenceLength		\|path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/SingleSequencings/SingleSequencing/SequenceLength
	}}		}}

			[[Category: Terms documentations]]

WikiSysop: /* Removed elements */

2013-11-21T15:26:56Z

Removed elements

@@ Line 165: / Line 165: @@
 |comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements
 }}
 =Changed elements=
 {{ABCD-Change

WikiSysop: /* Changed elements */

2013-11-21T15:25:06Z

Changed elements

@@ Line 174: / Line 174: @@
 |path = /DNASample/Quality
 |comments = type changed to xs:string; vocabulary deleted
 }}

WikiSysop at 11:32, 15 October 2013

2013-10-15T11:32:56Z

← Older revision		Revision as of 13:32, 15 October 2013
Line 42:		Line 42:
	\|path = /DNASample/ExtractionMethod		\|path = /DNASample/ExtractionMethod
	\|comments = moved to core ABCD2.06 <code>/DataSets/DataSet/Units/Unit/SpecimenUnit/Preperation/PreparationProcess</code>		\|comments = moved to core ABCD2.06 <code>/DataSets/DataSet/Units/Unit/SpecimenUnit/Preperation/PreparationProcess</code>
			}}

			{{ABCD-Change
			\|element = BlockedUntil
			\|status = Removed
			\|type = xs:date
			\|min = 0
			\|documentation = Date until ordering of DNA samples is blocked
			\|path = /DNASample/BlockedUntil
			\|comments = moved to core ABCD2.06 <code>/DataSets/DataSet/Units/Unit/LoanRestriction/BlockedUntil</code>
			}}

			{{ABCD-Change
			\|element = ProvidedBy
			\|status = Removed
			\|type = xs:string
			\|min = 0
			\|documentation = Outside person or company which delivered or donated the DNA sample
			\|path = /DNASample/ProvidedBy
			\|comments = moved to core ABCD2.06 <code>Unit/SpecimenUnit/Acquisition/AcquiredFrom</code>
	}}		}}

Line 94:		Line 114:
	\|comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements		\|comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements
	}}		}}


	{{ABCD-Change		{{ABCD-Change
Line 145:		Line 164:
	\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse/PrimerReferenceLink		\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse/PrimerReferenceLink
	\|comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements		\|comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements
			}}
			=Changed elements=
			{{ABCD-Change
			\|element = Quality
			\|status = Changed
			\|type = xs:string
			\|min = 0
			\|documentation = DNA or tissue quality estimation
			\|path = /DNASample/Quality
			\|comments = type changed to xs:string; vocabulary deleted
	}}		}}

Line 156:		Line 185:
	\|documentation = Method used for determination of DNA or tissue quality parameters		\|documentation = Method used for determination of DNA or tissue quality parameters
	\|path = /DNASample/QualityCheckMethod		\|path = /DNASample/QualityCheckMethod
	~~\|comments = check again, as well as the other Quality fields!~~
	}}

	~~{{ABCD-Change~~
	~~\|element = Images~~
	~~\|status = Changed~~
	~~\|type = Container~~
	~~\|min = 0~~
	~~\|documentation = Container element for information on images of the DNA sample (e.g. agarose gel images)~~
	~~\|path = /DNASample/Images~~
	~~\|comments = changed documentation~~
	}}		}}

Line 179:		Line 197:
	\|content = Image+		\|content = Image+
	}}		}}


	{{ABCD-Change		{{ABCD-Change
Line 185:		Line 202:
	\|status = New		\|status = New
	\|type = Container		\|type = Container
	\|min = 0		\|min = 1
	\|max = unbounded		\|max = unbounded
	\|documentation = Container element for information on images of the DNA sample (e.g. agarose gel images)		\|documentation = Container element for information on images of the DNA sample (e.g. agarose gel images)
Line 274:		Line 291:
	\|element = AmplificationPrimer		\|element = AmplificationPrimer
	\|status = New		\|status = New
	\|type = ~~Container~~		\|type = Primer
	\|min = 0		\|min = 1
	\|max = unbounded		\|max = unbounded
	\|documentation = Container element for an individual amplification primer		\|documentation = Container element for an individual amplification primer
	\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimer		\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimer
	\|comments = uses the generic element <code>Primer</code>		\|comments = uses the generic element <code>Primer</code>
	\|content = ~~Primer+~~		\|content = PrimerSequence?, PrimerName?, PrimerReferenceCitation?, PrimerReferenceLink?
	}}		}}

Line 287:		Line 304:
	\|status = New		\|status = New
	\|type = Container		\|type = Container
	\|min = 0		\|min = 1
			\|max = unbounded
	\|documentation = Container element for cloning primers		\|documentation = Container element for cloning primers
	\|path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/CloningPrimers		\|path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/CloningPrimers
Line 296:		Line 314:
	\|element = CloningPrimer		\|element = CloningPrimer
	\|status = New		\|status = New
	\|type = ~~Container~~		\|type = Primer
	\|min = 0		\|min = 0
	\|documentation = Container element for an individual cloning primer		\|documentation = Container element for an individual cloning primer
	\|path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/CloningPrimers/CloningPrimer		\|path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/CloningPrimers/CloningPrimer
	\|comments = uses the generic element <code>Primer</code>		\|comments = uses the generic element <code>Primer</code>
	\|content = ~~Primer+~~		\|content = PrimerSequence?, PrimerName?, PrimerReferenceCitation?, PrimerReferenceLink?
	}}		}}

Line 307:		Line 325:
	\|element = SequencingPrimer		\|element = SequencingPrimer
	\|status = Changed		\|status = Changed
	\|type = ~~Container~~		\|type = Primer
	\|min = 0		\|min = 1
	\|max = unbounded		\|max = unbounded
	\|documentation = Container element for an individual sequencing primer		\|documentation = Container element for an individual sequencing primer
	\|path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/SequencingPrimers/SequencingPrimer		\|path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/SingleSequencings/SingleSequencing/SequencingPrimers/SequencingPrimer
	\|comments = uses the generic element <code>Primer</code> now		\|comments = uses the generic element <code>Primer</code> now
	~~\|content = Primer+~~
	}}

	~~{{ABCD-Change~~
	~~\|element = Primer~~
	~~\|status = Changed~~
	~~\|type = Container~~
	~~\|min = 0~~
	~~\|documentation = Container element for information of a sequencing, cloning, or amplification primer~~
	~~\|path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/SequencingPrimers/SequencingPrimer/Primer~~
	~~\|comments = changed name of element~~
	\|content = PrimerSequence?, PrimerName?, PrimerReferenceCitation?, PrimerReferenceLink?		\|content = PrimerSequence?, PrimerName?, PrimerReferenceCitation?, PrimerReferenceLink?
	}}		}}

WikiSysop at 08:48, 18 September 2013

2013-09-18T08:48:09Z

← Older revision		Revision as of 10:48, 18 September 2013
Line 1:		Line 1:
	This document contains information on removed, changed and new elements in the DNA extension for ABCD. The new ~~extension~~ is not in use yet and will be published in October 2013. We will keep you informed about the ongoing process.		This document contains information on removed, changed and new elements in the second version of the DNA extension for ABCD. The new version is not in use yet and will be published in October 2013. We will keep you informed about the ongoing process.

	=Removed elements=		=Removed elements=

WikiSysop at 08:45, 18 September 2013

2013-09-18T08:45:22Z

← Older revision		Revision as of 10:45, 18 September 2013
Line 1:		Line 1:
			This document contains information on removed, changed and new elements in the DNA extension for ABCD. The new extension is not in use yet and will be published in October 2013. We will keep you informed about the ongoing process.

	=Removed elements=		=Removed elements=
	Most of deleted elements in the DNA extension has been moved to the core ABCD2.06. See details below		Most of deleted elements in the DNA extension has been moved to the core ABCD2.06. See details below

WikiSysop: /* Deleted elements */

2013-09-18T08:43:03Z

Deleted elements

← Older revision		Revision as of 10:43, 18 September 2013
Line 1:		Line 1:
	=~~Deleted~~ elements=		=Removed elements=
	Most of deleted elements in the DNA extension has been moved to the core ABCD2.06. See details below		Most of deleted elements in the DNA extension has been moved to the core ABCD2.06. See details below

	{{ABCD-Change		{{ABCD-Change
	\|element = Preservation		\|element = Preservation
	\|status = ~~Deleted~~		\|status = Removed
	\|type = xs:string		\|type = xs:string
	\|min = 0		\|min = 0
Line 14:		Line 14:
	{{ABCD-Change		{{ABCD-Change
	\|element = ExtractionStaff		\|element = ExtractionStaff
	\|status = ~~Deleted~~		\|status = Removed
	\|type = xs:string		\|type = xs:string
	\|min = 0		\|min = 0
Line 24:		Line 24:
	{{ABCD-Change		{{ABCD-Change
	\|element = ExtractionDate		\|element = ExtractionDate
	\|status = ~~Deleted~~		\|status = Removed
	\|type = xs:date		\|type = xs:date
	\|min = 0		\|min = 0
Line 34:		Line 34:
	{{ABCD-Change		{{ABCD-Change
	\|element = ExtractionMethod		\|element = ExtractionMethod
	\|status = ~~Deleted~~		\|status = Removed
	\|type = xs:string		\|type = xs:string
	\|min = 0		\|min = 0
Line 44:		Line 44:
	{{ABCD-Change		{{ABCD-Change
	\|element = AmplificationPrimerForward		\|element = AmplificationPrimerForward
	\|status = ~~Deleted~~		\|status = Removed
	\|type = Container		\|type = Container
	\|min = 0		\|min = 0
Line 55:		Line 55:
	{{ABCD-Change		{{ABCD-Change
	\|element = PrimerName		\|element = PrimerName
	\|status = ~~Deleted~~		\|status = Removed
	\|type = xs:string		\|type = xs:string
	\|min = 0		\|min = 0
Line 65:		Line 65:
	{{ABCD-Change		{{ABCD-Change
	\|element = PrimerSequence		\|element = PrimerSequence
	\|status = ~~Deleted~~		\|status = Removed
	\|type = xs:string		\|type = xs:string
	\|min = 0		\|min = 0
Line 75:		Line 75:
	{{ABCD-Change		{{ABCD-Change
	\|element = PrimerReferenceCitation		\|element = PrimerReferenceCitation
	\|status = ~~Deleted~~		\|status = Removed
	\|type = xs:string		\|type = xs:string
	\|min = 0		\|min = 0
Line 85:		Line 85:
	{{ABCD-Change		{{ABCD-Change
	\|element = PrimerReferenceLink		\|element = PrimerReferenceLink
	\|status = ~~Deleted~~		\|status = Removed
	\|type = xs:string		\|type = xs:string
	\|min = 0		\|min = 0
Line 96:		Line 96:
	{{ABCD-Change		{{ABCD-Change
	\|element = AmplificationPrimerReverse		\|element = AmplificationPrimerReverse
	\|status = ~~Deleted~~		\|status = Removed
	\|type = Container		\|type = Container
	\|min = 0		\|min = 0
Line 107:		Line 107:
	{{ABCD-Change		{{ABCD-Change
	\|element = PrimerName		\|element = PrimerName
	\|status = ~~Deleted~~		\|status = Removed
	\|type = xs:string		\|type = xs:string
	\|min = 0		\|min = 0
Line 117:		Line 117:
	{{ABCD-Change		{{ABCD-Change
	\|element = PrimerSequence		\|element = PrimerSequence
	\|status = ~~Deleted~~		\|status = Removed
	\|type = xs:string		\|type = xs:string
	\|min = 0		\|min = 0
Line 127:		Line 127:
	{{ABCD-Change		{{ABCD-Change
	\|element = PrimerReferenceCitation		\|element = PrimerReferenceCitation
	\|status = ~~Deleted~~		\|status = Removed
	\|type = xs:string		\|type = xs:string
	\|min = 0		\|min = 0
Line 137:		Line 137:
	{{ABCD-Change		{{ABCD-Change
	\|element = PrimerReferenceLink		\|element = PrimerReferenceLink
	\|status = ~~Deleted~~		\|status = Removed
	\|type = xs:string		\|type = xs:string
	\|min = 0		\|min = 0

WikiSysop: /* Deleted elements */

2013-09-18T08:41:27Z

Deleted elements

WikiSysop: /* Deleted elements */

2013-09-18T08:36:53Z

Deleted elements

WikiSysop at 08:35, 18 September 2013

2013-09-18T08:35:08Z

Show changes

← Older revision		Revision as of 10:41, 18 September 2013
Line 9:		Line 9:
	\|documentation = Form of conservation or fixation in which the tissue was available for extraction		\|documentation = Form of conservation or fixation in which the tissue was available for extraction
	\|path = /DNASample/Preservation		\|path = /DNASample/Preservation
	\|comments = moved to core ABCD2.06		\|comments = moved to core ABCD2.06 <code>/DataSets/DataSet/Units/Unit/SpecimenUnit/Preservations/Preservation</code>
	}}		}}

Line 19:		Line 19:
	\|documentation = Person who carried out DNA extraction		\|documentation = Person who carried out DNA extraction
	\|path = /DNASample/ExtractionStaff		\|path = /DNASample/ExtractionStaff
	\|comments = moved to core ABCD2.06		\|comments = moved to core ABCD2.06 <code>/DataSets/DataSet/Units/Unit/SpecimenUnit/Preperation/PreparationAgent/Person/FullName</code>
	}}		}}

Line 29:		Line 29:
	\|documentation = Date of DNA extraction		\|documentation = Date of DNA extraction
	\|path = /DNASample/ExtractionDate		\|path = /DNASample/ExtractionDate
	\|comments = moved to core ABCD2.06		\|comments = moved to core ABCD2.06 <code>/DataSets/DataSet/Units/Unit/SpecimenUnit/Preperation/PreparationDate</code>
	}}		}}

Line 39:		Line 39:
	\|documentation = Method or extraction protocol applied		\|documentation = Method or extraction protocol applied
	\|path = /DNASample/ExtractionMethod		\|path = /DNASample/ExtractionMethod
	\|comments = moved to core ABCD2.06		\|comments = moved to core ABCD2.06 <code>/DataSets/DataSet/Units/Unit/SpecimenUnit/Preperation/PreparationProcess</code>
	}}		}}

← Older revision		Revision as of 10:36, 18 September 2013
Line 1:		Line 1:
	=Deleted elements=		=Deleted elements=
	~~Deleted~~ elements in the DNA extension has been moved to the core ABCD2.06. See details below		Most of deleted elements in the DNA extension has been moved to the core ABCD2.06. See details below

	{{ABCD-Change		{{ABCD-Change
Line 49:		Line 49:
	\|documentation = Container element for information about the amplification forward primer		\|documentation = Container element for information about the amplification forward primer
	\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerForward		\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerForward
	\|comments = deleted; ~~insted~~ use of a more generic <code>Primer</code> elements, see details in part New elements		\|comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements
	\|content = PrimerName?, PrimerSequence?, PrimerReferenceCitation?, PrimerReferenceLink?		\|content = PrimerName?, PrimerSequence?, PrimerReferenceCitation?, PrimerReferenceLink?
	}}		}}
Line 60:		Line 60:
	\|documentation = Name of the forward primer		\|documentation = Name of the forward primer
	\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerForward/PrimerName		\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerForward/PrimerName
	\|comments = deleted; ~~insted~~ use of a more generic <code>Primer</code> elements, see details in part New elements		\|comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements
	}}		}}

Line 70:		Line 70:
	\|documentation = DNA sequence of the forward primer (5' to 3')		\|documentation = DNA sequence of the forward primer (5' to 3')
	\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerForward/PrimerSequence		\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerForward/PrimerSequence
	\|comments = deleted; ~~insted~~ use of a more generic <code>Primer</code> elements, see details in part New elements		\|comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements
	}}		}}

Line 80:		Line 80:
	\|documentation = First reference of the forward primer		\|documentation = First reference of the forward primer
	\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerForward/PrimerReferenceCitation		\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerForward/PrimerReferenceCitation
	\|comments = deleted; ~~insted~~ use of a more generic <code>Primer</code> elements, see details in part New elements		\|comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements
	}}		}}

Line 90:		Line 90:
	\|documentation = Link to the first reference of the forward primer		\|documentation = Link to the first reference of the forward primer
	\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerForward/PrimerReferenceLink		\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerForward/PrimerReferenceLink
	\|comments = deleted; ~~insted~~ use of a more generic <code>Primer</code> elements, see details in part New elements		\|comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements
	}}		}}

Line 101:		Line 101:
	\|documentation = Container element for information about the amplification reverse primer		\|documentation = Container element for information about the amplification reverse primer
	\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse		\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse
	\|comments = deleted; ~~insted~~ use of a more generic <code>Primer</code> elements, see details in part New elements		\|comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements
	\|content = PrimerName?, PrimerSequence?, PrimerReferenceCitation?, PrimerReferenceLink?		\|content = PrimerName?, PrimerSequence?, PrimerReferenceCitation?, PrimerReferenceLink?
	}}		}}
Line 112:		Line 112:
	\|documentation = Name of the reverse primer		\|documentation = Name of the reverse primer
	\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse/PrimerName		\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse/PrimerName
	\|comments = deleted; ~~insted~~ use of a more generic <code>Primer</code> elements, see details in part New elements		\|comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements
	}}		}}

Line 122:		Line 122:
	\|documentation = DNA sequence of the reverse primer (5' to 3')		\|documentation = DNA sequence of the reverse primer (5' to 3')
	\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse/PrimerSequence		\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse/PrimerSequence
	\|comments = deleted; ~~insted~~ use of a more generic <code>Primer</code> elements, see details in part New elements		\|comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements
	}}		}}

Line 132:		Line 132:
	\|documentation = First reference of the reverse primer		\|documentation = First reference of the reverse primer
	\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse/PrimerReferenceCitation		\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse/PrimerReferenceCitation
	\|comments = deleted; ~~insted~~ use of a more generic <code>Primer</code> elements, see details in part New elements		\|comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements
	}}		}}

Line 142:		Line 142:
	\|documentation = Link to the first reference of the reverse primer		\|documentation = Link to the first reference of the reverse primer
	\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse/PrimerReferenceLink		\|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse/PrimerReferenceLink
	\|comments = deleted; ~~insted~~ use of a more generic <code>Primer</code> elements, see details in part New elements		\|comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements
	}}		}}



	=New elements=		=New elements=