How to search for material - Revision history

WikiSysop: /* Preorder samples/Login feature */

2025-01-29T13:00:37Z

Preorder samples/Login feature

← Older revision		Revision as of 15:00, 29 January 2025
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	In case sequences or multimedia items are associated to these materials, further tabs will appear. At the very bottom you'll find information about the dataset.		In case sequences or multimedia items are associated to these materials, further tabs will appear. At the very bottom you'll find information about the dataset.
	[[File:GGBN data portal add record detail.jpg\|center\|700px]]		[[File:GGBN data portal add record detail.jpg\|center\|700px]]

	~~==Preorder samples/Login feature==~~
	~~[[File:GGBN data portal login.jpg\|thumb\|200px\|login feature]]~~
	To preorder samples or subscribe to searches you must register as a user. To do so click on "log in" or the little human in the menu. We appreciate if you fill out the complete contact information, since these data can then be forwarded to the sample holding institution, but this is not mandatory.

	<div id="wikinote">Your orders will be forwarded to the respective institution holding the requested samples. Please check our [[Data_Privacy \| Data Privacy Statement]] for more information about storage of user data. If you don't want to register as a user you can also send us an email at info@ggbn.org.</div>
	~~[[File:GGBN data portal menu login.jpg\|thumb\|right\|100px]]~~
	~~After login a menu will appear under the human icon.~~

	~~'''Profile''' Change your personal information here.~~

	~~'''Settings''' Personal settings for the hitlist can be defined here.~~

	'''Subscription, Save Searches''' When logged in the hitlist shows an additional column to add samples to the cart. If a sample is not available for loaning for some reasons there is an 'x'. On top right appear buttons to subscribe to this search (and get informed via email if new records are available) as well as to save this search or add selected samples to the cart. You can also add a sample to the card via the details page.
	~~[[File:GGBN data portal hitlist logged in.jpg\|center\|700px]]~~

	'''Shopping Cart''' If you have added samples to your cart you can go to "View cart" or "Shopping Cart" via the menu or the buttons on right. In step 1 you will see an overview of requested samples and if it is a CITES taxon again a note. Please make sure you belong to an institution registered with CITES, otherwise you can't loan such samples. Go to "Checkout" to proceed.
	~~[[File:GGBN data portal shopping cart step1.jpg\|center\|700px]]~~

	In step 2 the samples are grouped by holding institution. In this example we preorder at two different institutions. You can add a comment to them if you want. When clicking "Order now" your preorder is placed. GGBN forwards your request to the holding institutions. We do not forward your complete order, but only sample information relevant for the sample holding collection.
	~~[[File:GGBN data portal shopping cart step2.jpg\|center\|700px]]~~
	<div id="wikinote">'''Note: You can only preorder samples. It might be that the samples cannot be loaned to you for some reasons. The curator will contact you and provide details about further procedure. Every GGBN partner is responsible for its samples and procedures. Some partners may require a service charge. In any case you have to sign a Material Transfer Agreement before samples can be loaned. The curator will provide you more details about it.</div>

WikiSysop: /* Record detail */

2025-01-29T12:59:27Z

Record detail

← Older revision		Revision as of 14:59, 29 January 2025
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	==Record detail==		==Record detail==
			[[File:Material_entities.jpg\|thumb\|400px\|This is an example of 6 material entities that are aggregated as three GGBN records (green [1], red [2] and blue [3]) through their relationships. Together they represent one occurrence. In this example there would be three record pages. Please check out our [[Definition of GGBN Terms]] for further explanation]]
	The record details page aggregates data from multiple sources. Please have a look at our [[Definition_of_GGBN_Terms \| definitions on]] differences between GGBN records, material entities and occurrences. Here you see an example with DNA sample, Tissue sample and Specimen. This is both indicated in the top blue bar (individual tabs for each material entity) and above the title. The data are coming from up to three different datasources, depending on where the samples and data are deposited. Below the map you find information about related records (e.g. another tissue derived from the same specimen) as well as information about loaning availabilities and conditions. Furthermore it is checked whether the taxon is listed on CITES. Left to the map you find collecting information and determination details. In the lower part you'll find with information about the physical samples and where to find them. If you click on the Institution Full Name you'll see the GGBN members page for this institution.		The record details page aggregates data from multiple sources. Please have a look at our [[Definition_of_GGBN_Terms \| definitions on]] differences between GGBN records, material entities and occurrences. Here you see an example with DNA sample, Tissue sample and Specimen. This is both indicated in the top blue bar (individual tabs for each material entity) and above the title. The data are coming from up to three different datasources, depending on where the samples and data are deposited. Below the map you find information about related records (e.g. another tissue derived from the same specimen) as well as information about loaning availabilities and conditions. Furthermore it is checked whether the taxon is listed on CITES. Left to the map you find collecting information and determination details. In the lower part you'll find with information about the physical samples and where to find them. If you click on the Institution Full Name you'll see the GGBN members page for this institution.

	In case sequences or multimedia items are associated to these materials, further tabs will appear. At the very bottom you'll find information about the dataset.		In case sequences or multimedia items are associated to these materials, further tabs will appear. At the very bottom you'll find information about the dataset.
	[[File:GGBN data portal add record detail.jpg\|center\|700px]]		[[File:GGBN data portal add record detail.jpg\|center\|700px]]

	[[File:Material_entities.jpg\|thumb\|400px\|This is an example of 6 material entities that are aggregated as three GGBN records (green [1], red [2] and blue [3]) through their relationships. Together they represent one occurrence. In this example there would be three record pages. Please check out our [[Definition of GGBN Terms]] for further explanation]]

	==Preorder samples/Login feature==		==Preorder samples/Login feature==

WikiSysop: /* Record detail */

2025-01-29T12:58:49Z

Record detail

← Older revision		Revision as of 14:58, 29 January 2025
Line 36:		Line 36:
	In case sequences or multimedia items are associated to these materials, further tabs will appear. At the very bottom you'll find information about the dataset.		In case sequences or multimedia items are associated to these materials, further tabs will appear. At the very bottom you'll find information about the dataset.
	[[File:GGBN data portal add record detail.jpg\|center\|700px]]		[[File:GGBN data portal add record detail.jpg\|center\|700px]]

			[[File:Material_entities.jpg\|thumb\|400px\|This is an example of 6 material entities that are aggregated as three GGBN records (green [1], red [2] and blue [3]) through their relationships. Together they represent one occurrence. In this example there would be three record pages. Please check out our [[Definition of GGBN Terms]] for further explanation]]

	==Preorder samples/Login feature==		==Preorder samples/Login feature==

WikiSysop: /* Search by fields */

2025-01-29T12:58:34Z

Search by fields

← Older revision		Revision as of 14:58, 29 January 2025
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	Here you can choose different parameters to filter your results using the facets on the left. The filters/facets are used with AND operator, e.g. materialType=DNA&country=Belgium will search for DNA sample collected in Belgium. Within each facet the OR operator is used, e.g. materialType=DNA&materialType=tissue&country=Belgium will search for DNA OR tissue samples collected in Belgium. This can be extended to as many facets/filters you like.		Here you can choose different parameters to filter your results using the facets on the left. The filters/facets are used with AND operator, e.g. materialType=DNA&country=Belgium will search for DNA sample collected in Belgium. Within each facet the OR operator is used, e.g. materialType=DNA&materialType=tissue&country=Belgium will search for DNA OR tissue samples collected in Belgium. This can be extended to as many facets/filters you like.
	{\|
	\|[[File:~~Material_entities~~.~~jpg\|thumb~~\|~~400px~~\|~~This is an example of 6 material entities that are aggregated as three GGBN records (green [1~~]~~, red [2~~] and ~~blue [3]) through their relationships. Together they represent one occurrence. In this example there would be three record pages. Please check out our [[Definition~~ of ~~GGBN Terms]] for further explanation]]~~		[[File:Search expand sort.PNG\|center\|700px]]
	~~\|[[File:GGBN data portal add search fields step2.jpg\|thumb\|400px\|the field will appear (here Ocean) immediately. It can be deleted~~ by ~~clicking on~~ the ~~red cross]]~~		In addition you can sort the data and preview what kind of material is available by expanding the rows
	\|}

	Most of the fields are drop down lists or include suggestion lists to help you. E.g. when typing a name the portal searches for all synonyms and accepted names matching your search term and provides a suggestion list with detailed information about the name found in the GGBN backbone.		Most of the fields are drop down lists or include suggestion lists to help you. E.g. when typing a name the portal searches for all synonyms and accepted names matching your search term and provides a suggestion list with detailed information about the name found in the GGBN backbone.

WikiSysop: /* Search by fields */

2025-01-29T12:52:23Z

Search by fields

← Older revision		Revision as of 14:52, 29 January 2025
Line 22:		Line 22:
	Here you can choose different parameters to filter your results using the facets on the left. The filters/facets are used with AND operator, e.g. materialType=DNA&country=Belgium will search for DNA sample collected in Belgium. Within each facet the OR operator is used, e.g. materialType=DNA&materialType=tissue&country=Belgium will search for DNA OR tissue samples collected in Belgium. This can be extended to as many facets/filters you like.		Here you can choose different parameters to filter your results using the facets on the left. The filters/facets are used with AND operator, e.g. materialType=DNA&country=Belgium will search for DNA sample collected in Belgium. Within each facet the OR operator is used, e.g. materialType=DNA&materialType=tissue&country=Belgium will search for DNA OR tissue samples collected in Belgium. This can be extended to as many facets/filters you like.
	{\|		{\|
	\|[[File:~~GGBN data portal add search fields~~.jpg\|thumb\|~~200px~~\|~~select additional search parameters~~]]		\|[[File:Material_entities.jpg\|thumb\|400px\|This is an example of 6 material entities that are aggregated as three GGBN records (green [1], red [2] and blue [3]) through their relationships. Together they represent one occurrence. In this example there would be three record pages. Please check out our [[Definition of GGBN Terms]] for further explanation]]
	\|[[File:GGBN data portal add search fields step2.jpg\|thumb\|400px\|the field will appear (here Ocean) immediately. It can be deleted by clicking on the red cross]]		\|[[File:GGBN data portal add search fields step2.jpg\|thumb\|400px\|the field will appear (here Ocean) immediately. It can be deleted by clicking on the red cross]]
	\|}		\|}

WikiSysop: /* Record detail */

2025-01-29T12:47:40Z

Record detail

← Older revision		Revision as of 14:47, 29 January 2025
Line 32:		Line 32:

	==Record detail==		==Record detail==
	The record details page aggregates data from multiple sources. Please have a look at our [[Definition_of_GGBN_Terms \| definitions on]] differences between GGBN records, material entities and occurrences. Here you see an example with DNA sample, Tissue sample and Specimen. This is both indicated in the top blue bar (individual tabs for each material entity) and above the title. The data are coming from up to three different datasources, depending on where the samples and data are deposited. Below the map you find information about related records (e.g. another tissue derived from the same specimen) as well as information about loaning availabilities and conditions. Furthermore it is checked whether the taxon is listed on CITES. Left to the map you find collecting information and determination details. In the lower part you'll find with information about the physical samples and where to find them.		The record details page aggregates data from multiple sources. Please have a look at our [[Definition_of_GGBN_Terms \| definitions on]] differences between GGBN records, material entities and occurrences. Here you see an example with DNA sample, Tissue sample and Specimen. This is both indicated in the top blue bar (individual tabs for each material entity) and above the title. The data are coming from up to three different datasources, depending on where the samples and data are deposited. Below the map you find information about related records (e.g. another tissue derived from the same specimen) as well as information about loaning availabilities and conditions. Furthermore it is checked whether the taxon is listed on CITES. Left to the map you find collecting information and determination details. In the lower part you'll find with information about the physical samples and where to find them. If you click on the Institution Full Name you'll see the GGBN members page for this institution.

	In case sequences or multimedia items are associated to these materials, further tabs will appear.		In case sequences or multimedia items are associated to these materials, further tabs will appear. At the very bottom you'll find information about the dataset.
	[[File:GGBN data portal add record detail.jpg\|center\|700px]]		[[File:GGBN data portal add record detail.jpg\|center\|700px]]

WikiSysop: /* Record detail */

2025-01-29T12:46:17Z

Record detail

← Older revision		Revision as of 14:46, 29 January 2025
Line 32:		Line 32:

	==Record detail==		==Record detail==
	The record details page aggregates data from multiple sources. Here you see an example with DNA sample, Tissue sample and Specimen. ~~These~~ data are coming from up to three different datasources, depending on where the samples and data are deposited. Below the map you find information about related records (e.g. another tissue derived from the same specimen) as well as information about loaning availabilities and conditions. Furthermore it is checked whether the taxon is listed on CITES. Left to the map you find collecting information and determination details. In the lower part you ~~see different blue tabs~~ with information about the physical samples and where to find them.		The record details page aggregates data from multiple sources. Please have a look at our [[Definition_of_GGBN_Terms \| definitions on]] differences between GGBN records, material entities and occurrences. Here you see an example with DNA sample, Tissue sample and Specimen. This is both indicated in the top blue bar (individual tabs for each material entity) and above the title. The data are coming from up to three different datasources, depending on where the samples and data are deposited. Below the map you find information about related records (e.g. another tissue derived from the same specimen) as well as information about loaning availabilities and conditions. Furthermore it is checked whether the taxon is listed on CITES. Left to the map you find collecting information and determination details. In the lower part you'll find with information about the physical samples and where to find them.

	~~On top right information about the taxon are retrieved live from external sources, such as GBIF, NCBI, BOLD and EOL. In addition you see how many further samples for this taxon can be found at GGBN.~~		In case sequences or multimedia items are associated to these materials, further tabs will appear.

	~~On the left you find information on samples at GGBN that are from same population or same individual as this one.~~

	In case sequences~~, publications~~ or multimedia items are ~~provided~~, further tabs will appear.
	[[File:GGBN data portal add record detail.jpg\|center\|700px]]		[[File:GGBN data portal add record detail.jpg\|center\|700px]]

WikiSysop: /* Record detail */

2025-01-29T12:42:40Z

Record detail

← Older revision		Revision as of 14:42, 29 January 2025
Line 32:		Line 32:

	==Record detail==		==Record detail==
	The record details page aggregates data from multiple sources. Here you see an example with DNA sample, Tissue sample and Specimen. These data are coming from up to three different datasources, depending on where the samples and data are deposited. ~~On top~~ you find information about loaning availabilities and conditions. Furthermore it is checked whether the taxon is listed on CITES. Left to the map you find collecting information and determination details. In the lower part you see different blue tabs with information about the physical samples and where to find them.		The record details page aggregates data from multiple sources. Here you see an example with DNA sample, Tissue sample and Specimen. These data are coming from up to three different datasources, depending on where the samples and data are deposited. Below the map you find information about related records (e.g. another tissue derived from the same specimen) as well as information about loaning availabilities and conditions. Furthermore it is checked whether the taxon is listed on CITES. Left to the map you find collecting information and determination details. In the lower part you see different blue tabs with information about the physical samples and where to find them.

	On top right information about the taxon are retrieved live from external sources, such as GBIF, NCBI, BOLD and EOL. In addition you see how many further samples for this taxon can be found at GGBN.		On top right information about the taxon are retrieved live from external sources, such as GBIF, NCBI, BOLD and EOL. In addition you see how many further samples for this taxon can be found at GGBN.

WikiSysop: /* Search by fields */

2025-01-29T12:27:46Z

Search by fields

← Older revision		Revision as of 14:27, 29 January 2025
Line 27:		Line 27:

	Most of the fields are drop down lists or include suggestion lists to help you. E.g. when typing a name the portal searches for all synonyms and accepted names matching your search term and provides a suggestion list with detailed information about the name found in the GGBN backbone.		Most of the fields are drop down lists or include suggestion lists to help you. E.g. when typing a name the portal searches for all synonyms and accepted names matching your search term and provides a suggestion list with detailed information about the name found in the GGBN backbone.
	[[File:GGBN data portal suggestion list.jpg\|center~~\|500px~~]]		[[File:GGBN data portal suggestion list.jpg\|center]]

	<div id="wikinote">You can search for any scientific name using "Scientific Name", including higher taxa.</div>		<div id="wikinote">You can search for any scientific name using "Scientific Name", including higher taxa.</div>

WikiSysop: /* Edit your search */

2025-01-29T12:25:38Z

Edit your search

← Older revision		Revision as of 14:25, 29 January 2025
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	<div id="wikinote">You can search for any scientific name using "Scientific Name", including higher taxa.</div>		<div id="wikinote">You can search for any scientific name using "Scientific Name", including higher taxa.</div>

	~~==Edit your search==~~
	Your results are displayed in a hitlist. You can change the filters at any time. Just select further parameters from "add search field" or delete some using the red cross. To see the new results click on "Refine search". You can also change the order of the columns by clicking on the little arrows. To see the details of a record click on the blue scientific name.
	~~[[File:GGBN data portal hitlist.jpg\|center\|500px]]~~

	==Record detail==		==Record detail==