Task Force Data Standards and Data Access - Revision history

A.Plank: +categories

2023-01-09T10:30:47Z

+categories

← Older revision		Revision as of 12:30, 9 January 2023
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	*Mike Trizna, Smithsonian Institution (2017-present)		*Mike Trizna, Smithsonian Institution (2017-present)
	*Xiao Feng (Vincent) Wei, China National Gene Bank (2018-present)		*Xiao Feng (Vincent) Wei, China National Gene Bank (2018-present)

			[[Category:Data standards]]
			[[Category:Help]]

KatharineBarker: /* Accomplishments */

2020-06-25T13:56:43Z

Accomplishments

← Older revision		Revision as of 15:56, 25 June 2020
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	*[https://wiki.ggbn.org/ggbn/GGBN_Data_Standard GGBN Data Standard for Tissue and DNA]		*[https://wiki.ggbn.org/ggbn/GGBN_Data_Standard GGBN Data Standard for Tissue and DNA]
	*Tutorials on publishing genetic sample data using the [https://www.youtube.com/watch?v=0WhK5HpXEY0&feature=emb_title Integrated Publishing Toolkit] and [https://www.youtube.com/watch?v=OuqTCM6FcJU BioCase] provider software.		*Tutorials on publishing genetic sample data using the [https://www.youtube.com/watch?v=0WhK5HpXEY0&feature=emb_title Integrated Publishing Toolkit] and [https://www.youtube.com/watch?v=OuqTCM6FcJU BioCase] provider software.
	*Implementation of GGBN data standard in data management systems Arctos and Specify.		*Implementation of GGBN data standard in data management systems [https://arctosdb.org/ Arctos] and [https://www.sustain.specifysoftware.org/ Specify].
	*Implementation of a new algorithm for the taxonomic backbone in the GGBN Data Portal to provide robust counts on taxa needed for gap analysis.		*Implementation of a new algorithm for the taxonomic backbone in the GGBN Data Portal to provide robust counts on taxa needed for gap analysis.
	*Implementation of GGBN Data Portal [http://data.ggbn.org/ggbn_portal/usagestats/ usage statistics].		*Implementation of GGBN Data Portal [http://data.ggbn.org/ggbn_portal/usagestats/ usage statistics].


	=Related Resources=		=Related Resources=

KatharineBarker: /* Current Activities */

2020-06-25T13:55:15Z

Current Activities

← Older revision		Revision as of 15:55, 25 June 2020
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	*Developing tutorials for publishing genetic sample data on GGBN		*Developing tutorials for publishing genetic sample data on GGBN
	*Reducing bottlenecks for updating genetic sample data from providers		*Reducing bottlenecks for updating genetic sample data from providers
	*Implementation of GGBN data standard in Symbiota, Plutof and ZIMS.		*Implementation of GGBN data standard in [http://symbiota.org/docs/ Symbiota], [https://plutof.ut.ee/ Plutof] and [https://www.species360.org/products-services/zoo-aquarium-animal-management-software-2/ ZIMS].
	*Migration of GGBN institutional registry to GBIF		*Migration of GGBN institutional registry to [https://www.gbif.org/ GBIF]
	*Modifications of the GGBN data standard for environmental DNA and environmental samples, along with HTS library samples.		*Modifications of the GGBN data standard for environmental DNA and environmental samples, along with HTS library samples.
	*Performing a user review of the GGBN website to inform improvements to its data architecture.		*Performing a user review of the GGBN website to inform improvements to its data architecture.
	*Performing a review of GGBN’s permit fields, including any impediments to implementation by users.		*Performing a review of GGBN’s permit fields, including any impediments to implementation by users.
	*Collaboration with sequencing portals to provide best practices for documentation and citation of samples and make the GGBN data standard the global standard for implementation of the Nagoya Protocol.		*Collaboration with sequencing portals to provide best practices for documentation and citation of samples and make the GGBN data standard the global standard for implementation of the Nagoya Protocol.
	*As part of [https://www.synthesys.info/ SYNTHESYS+] Work Package 3, developing a best practices for usage of molecular collections handbook.		*As part of [https://www.synthesys.info/ SYNTHESYS+] Work Package 3, developing a best practices for usage of molecular collections handbook.

	=Accomplishments=		=Accomplishments=

KatharineBarker at 13:52, 25 June 2020

2020-06-25T13:52:51Z

← Older revision		Revision as of 15:52, 25 June 2020
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	~~xxx~~		=Program of Work=
			*Development of a data standard for sharing DNA and tissue information
			*Development and subsequent expansion of a global data platform for aggregating relevant data sources of genomic samples, vouchers, molecular analysis, publications, and images

			=Current Activities=

			*Developing tutorials for publishing genetic sample data on GGBN
			*Reducing bottlenecks for updating genetic sample data from providers
			*Implementation of GGBN data standard in Symbiota, Plutof and ZIMS.
			*Migration of GGBN institutional registry to GBIF
			*Modifications of the GGBN data standard for environmental DNA and environmental samples, along with HTS library samples.
			*Performing a user review of the GGBN website to inform improvements to its data architecture.
			*Performing a review of GGBN’s permit fields, including any impediments to implementation by users.
			*Collaboration with sequencing portals to provide best practices for documentation and citation of samples and make the GGBN data standard the global standard for implementation of the Nagoya Protocol.
			*As part of [https://www.synthesys.info/ SYNTHESYS+] Work Package 3, developing a best practices for usage of molecular collections handbook.

			=Accomplishments=
			*[https://wiki.ggbn.org/ggbn/GGBN_Data_Standard GGBN Data Standard for Tissue and DNA]
			*Tutorials on publishing genetic sample data using the [https://www.youtube.com/watch?v=0WhK5HpXEY0&feature=emb_title Integrated Publishing Toolkit] and [https://www.youtube.com/watch?v=OuqTCM6FcJU BioCase] provider software.
			*Implementation of GGBN data standard in data management systems Arctos and Specify.
			*Implementation of a new algorithm for the taxonomic backbone in the GGBN Data Portal to provide robust counts on taxa needed for gap analysis.
			*Implementation of GGBN Data Portal [http://data.ggbn.org/ggbn_portal/usagestats/ usage statistics].


			=Related Resources=
			*[https://library.ggbn.org/share/s/E3qbuKsJSwaI67IWItXCKw The Global Genome Biodiversity Network (GGBN) Data Standard specification]
			*[https://library.ggbn.org/share/s/xslU9MqCT5mgAIfRukyk8A The Global Genome Biodiversity Network (GGBN) Data Portal]


			=Current Members=
			*Gabi Droege, Botanic Garden and Botanical Museum Berlin-Dahlem (2011-present), Chair
			*Katie Barker, Smithsonian National Museum of Natural History (2011-present)
			*Margaret Cawsey, Commonwealth Scientific and Industrial Research Organisation (CSIRO) (2014-present)
			*Jonathan Coddington, Smithsonian National Museum of Natural History (2011-present)
			*Jeremy deWaard, Centre for Biodiversity Genomics, University of Guelph (2018-present)
			*Tim Fulcher, Royal Botanic Gardens, Kew (2016-present)
			*Peter Grobe, Zoological Research Museum Alexander Koenig (2016-present)
			*Chris Hunter, China National Gene Bank/GigaScience (2018-present)
			*Lars Erik Johannessen, Natural History Museum, Oslo (2016-present)
			*Kim Labuschagne, National Zoological Gardens of South Africa (2014-present)
			*Chris Meyer, Smithsonian National Museum of Natural History (2011-present)
			*Glen Newton, Agriculture and Agri-Food Canada (2016-present)
			*Thomas Orrell, Smithsonian National Museum of Natural History (2011-present)
			*Björn Quast, Zoological Research Museum Alexander Koenig (2016-present)
			*Dmitry Schigel, Global Biodiversity Information Facility (2016-present)
			*Mike Trizna, Smithsonian Institution (2017-present)
			*Xiao Feng (Vincent) Wei, China National Gene Bank (2018-present)

WikiSysop: Created page with "xxx"

2020-04-14T14:06:35Z

Created page with "xxx"

New page

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