Difference between revisions of "Search DNA Data"

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=Search and Edit Tool=
 
=Search and Edit Tool=
 
[[File:Main_menu_search.jpg|thumb|200px|Main menu]]
 
[[File:Main_menu_search.jpg|thumb|200px|Main menu]]
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This feature enables to search for specific specimen data sets and to edit them.
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This feature enables to search and edit specific specimen data. You can either search for a specific individual entering a unique ID or you can use taxonomic information or collection details to get a list of all entries matching your request. You can then choose a particular individual from the list appearing and change or add its information details. This might be necessary when the taxonomy has changed or if you want to add information on newly amplified fragments.
  
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==Specimen details==
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Once you have successfully logged in, click “Search”.<div style="clear:both;"></div>
  
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==DNA details==
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==Specimen Details==
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Here you can either use taxonomic information or collection details to search for specific specimens. Using other information instead of a unique UnitID, you might deliver several hits. If you get a large number of results, the appearing list can be sorted by 'Voucher ID/ Specimen', 'No Collection', 'Institution' or 'Taxon'.
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 +
If you click on one of the hits you will get back to the data input form and can review all data for this particular voucher, and by clicking on the 'Edit Dataset' button make changes on any entries you want to change. By then clicking on 'Save Specimen' the previous data will be overwrited with the new information.
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[[File:Search.jpg|thumb|300px|Search Mask]]
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{| class="wikitable"
 +
|- style="background-color:#C0C0C0;font-weight:bold"  valign="bottom"
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| width="200" height="13" | DNA and Tissue Data
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| width="200" | Explanation
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| width="50" | Pre-defined
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| width="200" | Example
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|-  valign="bottom"
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| height="13" | Specimen Number/UnitID
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| Unique identifier for the specimen
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| No
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| ZFMK-DNA ColCar 0399
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|-  valign="bottom"
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| height="13" | Specimen database
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| Database were the specimen is stored
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| Yes
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| Biodat
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|- style="background-color:#C0C0C0"  valign="bottom"
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|style="font-weight:bold" height="13" | Identifications
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| align="right" | &nbsp;
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| align="right" | &nbsp;
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| align="right" | &nbsp;
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|-  valign="bottom"
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| height="13" | Higher Taxon
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| Taxonomic details
 +
| No
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| Carabidae
 +
 
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|-  valign="bottom"
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| height="13" | Taxon Name
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| Genus and/or species name
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| No
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|style="font-style:Italic" | Carabus Archicarabus nemoralis
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|- style="background-color:#C0C0C0"  valign="bottom"
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|style="font-weight:bold" height="13" | Collection Info
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| align="right" | &nbsp;
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| align="right" | &nbsp;
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| align="right" | &nbsp;
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|-  valign="bottom"
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| height="13" | Country
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| Country were the specimen was collected
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| align="right" | &nbsp;
 +
| Germany
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|-  valign="bottom"
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| height="13" | Country ISO Code
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| ISO Code of this country
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| Yes
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| DE
 +
 
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|-  valign="bottom"
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| height="13" | Continent/Ocean
 +
| -
 +
| No
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| Europe
 +
 
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|-  valign="bottom"
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| height="13" | Locality
 +
| Region were the specimen was collected
 +
| No
 +
| Fehmahrn
 +
 
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|-  valign="bottom"
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| height="13" | Coordinates (Lat - Lon):
 +
| See comments
 +
| No
 +
| 54.4666666700 - 11.1166666700
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|-  valign="bottom"
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| height="13" | Collector(s)
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| -
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| No
 +
| K. Hanning
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|-  valign="bottom"
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| height="13" | Collection Date
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| Date of collection;YYYY-MM-DD
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| No
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| -
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|-  valign="bottom"
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| height="13" | Collector's Number
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| See comments
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| No
 +
| -
 +
 
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|}
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====Comments on specimen details====
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 +
'''Country ISO code'''<br>
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The International Organization for Standardization (ISO) has defined individual ISO codes for each country. The two-letter code should be provided here ([http://userpage.chemie.fu-berlin.de/diverse/doc/ISO_3166.html list] of the specific ISO codes for each country).
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'''Coordinates'''<br>
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If available, the respective locality coordinates can be provided here. Coordinates must be enterd in decimal degrees ([http://boulter.com/gps/#37%2023.516%20-122%2002.625 Coordinate converter]).
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 +
'''Collector's Number'''<br>
 +
The original identifier or code from the providing collecter might be different from the specimen UnitID of the electronic database. If known, it can be entered here.
 +
 
 +
==DNA Details==
 +
It is also possible to search for details on DNA information of specimen voucher. The search fields here similar to those of the [[Input_DNA_Data|Input Tool]]. Explanations and comments to the specific fields are given [[Input_DNA_Data#DNA Details|here]].

Latest revision as of 11:19, 20 May 2011

Search and Edit Tool

Main menu

This feature enables to search and edit specific specimen data. You can either search for a specific individual entering a unique ID or you can use taxonomic information or collection details to get a list of all entries matching your request. You can then choose a particular individual from the list appearing and change or add its information details. This might be necessary when the taxonomy has changed or if you want to add information on newly amplified fragments.

Once you have successfully logged in, click “Search”.

Specimen Details

Here you can either use taxonomic information or collection details to search for specific specimens. Using other information instead of a unique UnitID, you might deliver several hits. If you get a large number of results, the appearing list can be sorted by 'Voucher ID/ Specimen', 'No Collection', 'Institution' or 'Taxon'.

If you click on one of the hits you will get back to the data input form and can review all data for this particular voucher, and by clicking on the 'Edit Dataset' button make changes on any entries you want to change. By then clicking on 'Save Specimen' the previous data will be overwrited with the new information.

Search Mask
DNA and Tissue Data Explanation Pre-defined Example
Specimen Number/UnitID Unique identifier for the specimen No ZFMK-DNA ColCar 0399
Specimen database Database were the specimen is stored Yes Biodat
Identifications      
Higher Taxon Taxonomic details No Carabidae
Taxon Name Genus and/or species name No Carabus Archicarabus nemoralis
Collection Info      
Country Country were the specimen was collected   Germany
Country ISO Code ISO Code of this country Yes DE
Continent/Ocean - No Europe
Locality Region were the specimen was collected No Fehmahrn
Coordinates (Lat - Lon): See comments No 54.4666666700 - 11.1166666700
Collector(s) - No K. Hanning
Collection Date Date of collection;YYYY-MM-DD No -
Collector's Number See comments No -

Comments on specimen details

Country ISO code
The International Organization for Standardization (ISO) has defined individual ISO codes for each country. The two-letter code should be provided here (list of the specific ISO codes for each country).

Coordinates
If available, the respective locality coordinates can be provided here. Coordinates must be enterd in decimal degrees (Coordinate converter).

Collector's Number
The original identifier or code from the providing collecter might be different from the specimen UnitID of the electronic database. If known, it can be entered here.

DNA Details

It is also possible to search for details on DNA information of specimen voucher. The search fields here similar to those of the Input Tool. Explanations and comments to the specific fields are given here.

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