Difference between revisions of "DNA extension Version2"
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− | = | + | This document contains information on removed, changed and new elements in the second version of the DNA extension for ABCD. The new version is not in use yet and will be published in October 2013. We will keep you informed about the ongoing process. |
+ | |||
+ | =Removed elements= | ||
Most of deleted elements in the DNA extension has been moved to the core ABCD2.06. See details below | Most of deleted elements in the DNA extension has been moved to the core ABCD2.06. See details below | ||
{{ABCD-Change | {{ABCD-Change | ||
|element = Preservation | |element = Preservation | ||
− | |status = | + | |status = Removed |
|type = xs:string | |type = xs:string | ||
|min = 0 | |min = 0 | ||
|documentation = Form of conservation or fixation in which the tissue was available for extraction | |documentation = Form of conservation or fixation in which the tissue was available for extraction | ||
|path = /DNASample/Preservation | |path = /DNASample/Preservation | ||
− | |comments = moved to core ABCD2.06 | + | |comments = moved to core ABCD2.06 <code>/DataSets/DataSet/Units/Unit/SpecimenUnit/Preservations/Preservation</code> |
}} | }} | ||
{{ABCD-Change | {{ABCD-Change | ||
|element = ExtractionStaff | |element = ExtractionStaff | ||
− | |status = | + | |status = Removed |
|type = xs:string | |type = xs:string | ||
|min = 0 | |min = 0 | ||
|documentation = Person who carried out DNA extraction | |documentation = Person who carried out DNA extraction | ||
|path = /DNASample/ExtractionStaff | |path = /DNASample/ExtractionStaff | ||
− | |comments = moved to core ABCD2.06 | + | |comments = moved to core ABCD2.06 <code>/DataSets/DataSet/Units/Unit/SpecimenUnit/Preperation/PreparationAgent/Person/FullName</code> |
}} | }} | ||
{{ABCD-Change | {{ABCD-Change | ||
|element = ExtractionDate | |element = ExtractionDate | ||
− | |status = | + | |status = Removed |
|type = xs:date | |type = xs:date | ||
|min = 0 | |min = 0 | ||
|documentation = Date of DNA extraction | |documentation = Date of DNA extraction | ||
|path = /DNASample/ExtractionDate | |path = /DNASample/ExtractionDate | ||
− | |comments = moved to core ABCD2.06 | + | |comments = moved to core ABCD2.06 <code>/DataSets/DataSet/Units/Unit/SpecimenUnit/Preperation/PreparationDate</code> |
}} | }} | ||
{{ABCD-Change | {{ABCD-Change | ||
|element = ExtractionMethod | |element = ExtractionMethod | ||
− | |status = | + | |status = Removed |
|type = xs:string | |type = xs:string | ||
|min = 0 | |min = 0 | ||
|documentation = Method or extraction protocol applied | |documentation = Method or extraction protocol applied | ||
|path = /DNASample/ExtractionMethod | |path = /DNASample/ExtractionMethod | ||
− | |comments = moved to core ABCD2.06 | + | |comments = moved to core ABCD2.06 <code>/DataSets/DataSet/Units/Unit/SpecimenUnit/Preperation/PreparationProcess</code> |
+ | }} | ||
+ | |||
+ | {{ABCD-Change | ||
+ | |element = BlockedUntil | ||
+ | |status = Removed | ||
+ | |type = xs:date | ||
+ | |min = 0 | ||
+ | |documentation = Date until ordering of DNA samples is blocked | ||
+ | |path = /DNASample/BlockedUntil | ||
+ | |comments = moved to core ABCD2.06 <code>/DataSets/DataSet/Units/Unit/LoanRestriction/BlockedUntil</code> | ||
+ | }} | ||
+ | |||
+ | {{ABCD-Change | ||
+ | |element = ProvidedBy | ||
+ | |status = Removed | ||
+ | |type = xs:string | ||
+ | |min = 0 | ||
+ | |documentation = Outside person or company which delivered or donated the DNA sample | ||
+ | |path = /DNASample/ProvidedBy | ||
+ | |comments = moved to core ABCD2.06 <code>Unit/SpecimenUnit/Acquisition/AcquiredFrom</code> | ||
}} | }} | ||
{{ABCD-Change | {{ABCD-Change | ||
|element = AmplificationPrimerForward | |element = AmplificationPrimerForward | ||
− | |status = | + | |status = Removed |
|type = Container | |type = Container | ||
|min = 0 | |min = 0 | ||
Line 55: | Line 77: | ||
{{ABCD-Change | {{ABCD-Change | ||
|element = PrimerName | |element = PrimerName | ||
− | |status = | + | |status = Removed |
|type = xs:string | |type = xs:string | ||
|min = 0 | |min = 0 | ||
Line 65: | Line 87: | ||
{{ABCD-Change | {{ABCD-Change | ||
|element = PrimerSequence | |element = PrimerSequence | ||
− | |status = | + | |status = Removed |
|type = xs:string | |type = xs:string | ||
|min = 0 | |min = 0 | ||
Line 75: | Line 97: | ||
{{ABCD-Change | {{ABCD-Change | ||
|element = PrimerReferenceCitation | |element = PrimerReferenceCitation | ||
− | |status = | + | |status = Removed |
|type = xs:string | |type = xs:string | ||
|min = 0 | |min = 0 | ||
Line 85: | Line 107: | ||
{{ABCD-Change | {{ABCD-Change | ||
|element = PrimerReferenceLink | |element = PrimerReferenceLink | ||
− | |status = | + | |status = Removed |
|type = xs:string | |type = xs:string | ||
|min = 0 | |min = 0 | ||
Line 92: | Line 114: | ||
|comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements | |comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements | ||
}} | }} | ||
− | |||
{{ABCD-Change | {{ABCD-Change | ||
|element = AmplificationPrimerReverse | |element = AmplificationPrimerReverse | ||
− | |status = | + | |status = Removed |
|type = Container | |type = Container | ||
|min = 0 | |min = 0 | ||
Line 107: | Line 128: | ||
{{ABCD-Change | {{ABCD-Change | ||
|element = PrimerName | |element = PrimerName | ||
− | |status = | + | |status = Removed |
|type = xs:string | |type = xs:string | ||
|min = 0 | |min = 0 | ||
Line 117: | Line 138: | ||
{{ABCD-Change | {{ABCD-Change | ||
|element = PrimerSequence | |element = PrimerSequence | ||
− | |status = | + | |status = Removed |
|type = xs:string | |type = xs:string | ||
|min = 0 | |min = 0 | ||
Line 127: | Line 148: | ||
{{ABCD-Change | {{ABCD-Change | ||
|element = PrimerReferenceCitation | |element = PrimerReferenceCitation | ||
− | |status = | + | |status = Removed |
|type = xs:string | |type = xs:string | ||
|min = 0 | |min = 0 | ||
Line 137: | Line 158: | ||
{{ABCD-Change | {{ABCD-Change | ||
|element = PrimerReferenceLink | |element = PrimerReferenceLink | ||
− | |status = | + | |status = Removed |
|type = xs:string | |type = xs:string | ||
|min = 0 | |min = 0 | ||
Line 143: | Line 164: | ||
|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse/PrimerReferenceLink | |path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse/PrimerReferenceLink | ||
|comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements | |comments = deleted; instead use of a more generic <code>Primer</code> elements, see details in part New elements | ||
+ | }} | ||
+ | |||
+ | |||
+ | {{ABCD-Change | ||
+ | |element = Chromatograms | ||
+ | |status = Removed | ||
+ | |type = Container | ||
+ | |min = 0 | ||
+ | |documentation = Container element for chromatograms of an individual DNA sequence | ||
+ | |path = /DNASample/Amplifications/Amplification/Amplification/Sequencings/Sequencing/SingleSequencings/SingleSequencing | ||
+ | |comments = deleted; per single read (single sequencing) only one chromatogram required | ||
+ | }} | ||
+ | |||
+ | =Changed elements= | ||
+ | {{ABCD-Change | ||
+ | |element = Quality | ||
+ | |status = Changed | ||
+ | |type = xs:string | ||
+ | |min = 0 | ||
+ | |documentation = DNA or tissue quality estimation | ||
+ | |path = /DNASample/Quality | ||
+ | |comments = type changed to xs:string; vocabulary deleted | ||
+ | }} | ||
+ | |||
+ | {{ABCD-Change | ||
+ | |element = ChromatogramFireURI | ||
+ | |status = Changed | ||
+ | |type = xs:anyURI | ||
+ | |min = 0 | ||
+ | |documentation = Link to the chromatogram of an individual DNA sequence (single read) | ||
+ | |path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/SingleSequencings/SingleSequencing | ||
+ | |comments = changed to minOccure = "0" (no longer unbounded) | ||
}} | }} | ||
Line 154: | Line 207: | ||
|documentation = Method used for determination of DNA or tissue quality parameters | |documentation = Method used for determination of DNA or tissue quality parameters | ||
|path = /DNASample/QualityCheckMethod | |path = /DNASample/QualityCheckMethod | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
}} | }} | ||
Line 177: | Line 219: | ||
|content = Image+ | |content = Image+ | ||
}} | }} | ||
− | |||
{{ABCD-Change | {{ABCD-Change | ||
Line 183: | Line 224: | ||
|status = New | |status = New | ||
|type = Container | |type = Container | ||
− | |min = | + | |min = 1 |
|max = unbounded | |max = unbounded | ||
|documentation = Container element for information on images of the DNA sample (e.g. agarose gel images) | |documentation = Container element for information on images of the DNA sample (e.g. agarose gel images) | ||
Line 272: | Line 313: | ||
|element = AmplificationPrimer | |element = AmplificationPrimer | ||
|status = New | |status = New | ||
− | |type = | + | |type = Primer |
− | |min = | + | |min = 1 |
|max = unbounded | |max = unbounded | ||
|documentation = Container element for an individual amplification primer | |documentation = Container element for an individual amplification primer | ||
|path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimer | |path = /DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimer | ||
|comments = uses the generic element <code>Primer</code> | |comments = uses the generic element <code>Primer</code> | ||
− | |content = | + | |content = PrimerSequence?, PrimerName?, PrimerReferenceCitation?, PrimerReferenceLink? |
}} | }} | ||
Line 285: | Line 326: | ||
|status = New | |status = New | ||
|type = Container | |type = Container | ||
− | |min = | + | |min = 1 |
+ | |max = unbounded | ||
|documentation = Container element for cloning primers | |documentation = Container element for cloning primers | ||
|path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/CloningPrimers | |path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/CloningPrimers | ||
Line 294: | Line 336: | ||
|element = CloningPrimer | |element = CloningPrimer | ||
|status = New | |status = New | ||
− | |type = | + | |type = Primer |
|min = 0 | |min = 0 | ||
|documentation = Container element for an individual cloning primer | |documentation = Container element for an individual cloning primer | ||
|path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/CloningPrimers/CloningPrimer | |path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/CloningPrimers/CloningPrimer | ||
|comments = uses the generic element <code>Primer</code> | |comments = uses the generic element <code>Primer</code> | ||
− | |content = | + | |content = PrimerSequence?, PrimerName?, PrimerReferenceCitation?, PrimerReferenceLink? |
}} | }} | ||
Line 305: | Line 347: | ||
|element = SequencingPrimer | |element = SequencingPrimer | ||
|status = Changed | |status = Changed | ||
− | |type = | + | |type = Primer |
− | |min = | + | |min = 1 |
|max = unbounded | |max = unbounded | ||
|documentation = Container element for an individual sequencing primer | |documentation = Container element for an individual sequencing primer | ||
− | |path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/SequencingPrimers/SequencingPrimer | + | |path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/SingleSequencings/SingleSequencing/SequencingPrimers/SequencingPrimer |
|comments = uses the generic element <code>Primer</code> now | |comments = uses the generic element <code>Primer</code> now | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
|content = PrimerSequence?, PrimerName?, PrimerReferenceCitation?, PrimerReferenceLink? | |content = PrimerSequence?, PrimerName?, PrimerReferenceCitation?, PrimerReferenceLink? | ||
}} | }} | ||
Line 372: | Line 403: | ||
|path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/SingleSequencings/SingleSequencing/SequenceLength | |path = /DNASample/Amplifications/Amplification/Sequencings/Sequencing/SingleSequencings/SingleSequencing/SequenceLength | ||
}} | }} | ||
+ | |||
+ | [[Category: Terms documentations]] |
Latest revision as of 11:34, 9 January 2023
This document contains information on removed, changed and new elements in the second version of the DNA extension for ABCD. The new version is not in use yet and will be published in October 2013. We will keep you informed about the ongoing process.
Removed elements
Most of deleted elements in the DNA extension has been moved to the core ABCD2.06. See details below
Preservation(link)
Core | Removed | xs:string | minOccurs: 0 | maxOccurs: 1 |
Form of conservation or fixation in which the tissue was available for extraction
Element Path:
/DNASample/Preservation
Comments:
moved to core ABCD2.06
/DataSets/DataSet/Units/Unit/SpecimenUnit/Preservations/Preservation
ExtractionStaff(link)
Core | Removed | xs:string | minOccurs: 0 | maxOccurs: 1 |
Person who carried out DNA extraction
Element Path:
/DNASample/ExtractionStaff
Comments:
moved to core ABCD2.06
/DataSets/DataSet/Units/Unit/SpecimenUnit/Preperation/PreparationAgent/Person/FullName
ExtractionDate(link)
Core | Removed | xs:date | minOccurs: 0 | maxOccurs: 1 |
Date of DNA extraction
Element Path:
/DNASample/ExtractionDate
Comments:
moved to core ABCD2.06
/DataSets/DataSet/Units/Unit/SpecimenUnit/Preperation/PreparationDate
ExtractionMethod(link)
Core | Removed | xs:string | minOccurs: 0 | maxOccurs: 1 |
Method or extraction protocol applied
Element Path:
/DNASample/ExtractionMethod
Comments:
moved to core ABCD2.06
/DataSets/DataSet/Units/Unit/SpecimenUnit/Preperation/PreparationProcess
BlockedUntil(link)
Core | Removed | xs:date | minOccurs: 0 | maxOccurs: 1 |
Date until ordering of DNA samples is blocked
Element Path:
/DNASample/BlockedUntil
Comments:
moved to core ABCD2.06
/DataSets/DataSet/Units/Unit/LoanRestriction/BlockedUntil
ProvidedBy(link)
Core | Removed | xs:string | minOccurs: 0 | maxOccurs: 1 |
Outside person or company which delivered or donated the DNA sample
Element Path:
/DNASample/ProvidedBy
Comments:
moved to core ABCD2.06
Unit/SpecimenUnit/Acquisition/AcquiredFrom
AmplificationPrimerForward(link)
Core | Removed | Container | minOccurs: 0 | maxOccurs: 1 |
Container element for information about the amplification forward primer
Element Path:
/DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerForward
Content:
PrimerName?, PrimerSequence?, PrimerReferenceCitation?, PrimerReferenceLink?
Comments:
deleted; instead use of a more generic
Primer
elements, see details in part New elementsPrimerName(link)
Core | Removed | xs:string | minOccurs: 0 | maxOccurs: 1 |
Name of the forward primer
Element Path:
/DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerForward/PrimerName
Comments:
deleted; instead use of a more generic
Primer
elements, see details in part New elementsPrimerSequence(link)
Core | Removed | xs:string | minOccurs: 0 | maxOccurs: 1 |
DNA sequence of the forward primer (5' to 3')
Element Path:
/DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerForward/PrimerSequence
Comments:
deleted; instead use of a more generic
Primer
elements, see details in part New elementsPrimerReferenceCitation(link)
Core | Removed | xs:string | minOccurs: 0 | maxOccurs: 1 |
First reference of the forward primer
Element Path:
/DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerForward/PrimerReferenceCitation
Comments:
deleted; instead use of a more generic
Primer
elements, see details in part New elementsPrimerReferenceLink(link)
Core | Removed | xs:string | minOccurs: 0 | maxOccurs: 1 |
Link to the first reference of the forward primer
Element Path:
/DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerForward/PrimerReferenceLink
Comments:
deleted; instead use of a more generic
Primer
elements, see details in part New elementsAmplificationPrimerReverse(link)
Core | Removed | Container | minOccurs: 0 | maxOccurs: 1 |
Container element for information about the amplification reverse primer
Element Path:
/DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse
Content:
PrimerName?, PrimerSequence?, PrimerReferenceCitation?, PrimerReferenceLink?
Comments:
deleted; instead use of a more generic
Primer
elements, see details in part New elementsPrimerName(link)
Core | Removed | xs:string | minOccurs: 0 | maxOccurs: 1 |
Name of the reverse primer
Element Path:
/DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse/PrimerName
Comments:
deleted; instead use of a more generic
Primer
elements, see details in part New elementsPrimerSequence(link)
Core | Removed | xs:string | minOccurs: 0 | maxOccurs: 1 |
DNA sequence of the reverse primer (5' to 3')
Element Path:
/DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse/PrimerSequence
Comments:
deleted; instead use of a more generic
Primer
elements, see details in part New elementsPrimerReferenceCitation(link)
Core | Removed | xs:string | minOccurs: 0 | maxOccurs: 1 |
First reference of the reverse primer
Element Path:
/DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse/PrimerReferenceCitation
Comments:
deleted; instead use of a more generic
Primer
elements, see details in part New elementsPrimerReferenceLink(link)
Core | Removed | xs:string | minOccurs: 0 | maxOccurs: 1 |
Link to the first reference of the reverse primer
Element Path:
/DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimerReverse/PrimerReferenceLink
Comments:
deleted; instead use of a more generic
Primer
elements, see details in part New elements
Chromatograms(link)
Core | Removed | Container | minOccurs: 0 | maxOccurs: 1 |
Container element for chromatograms of an individual DNA sequence
Element Path:
/DNASample/Amplifications/Amplification/Amplification/Sequencings/Sequencing/SingleSequencings/SingleSequencing
Comments:
deleted; per single read (single sequencing) only one chromatogram required
Changed elements
Quality(link)
Core | Changed | xs:string | minOccurs: 0 | maxOccurs: 1 |
DNA or tissue quality estimation
Element Path:
/DNASample/Quality
Comments:
type changed to xs:string; vocabulary deleted
ChromatogramFireURI(link)
Core | Changed | xs:anyURI | minOccurs: 0 | maxOccurs: 1 |
Link to the chromatogram of an individual DNA sequence (single read)
Element Path:
/DNASample/Amplifications/Amplification/Sequencings/Sequencing/SingleSequencings/SingleSequencing
Comments:
changed to minOccure = "0" (no longer unbounded)
New elements
QualityCheckMethod(link)
Core | New | xs:string | minOccurs: 0 | maxOccurs: 1 |
Method used for determination of DNA or tissue quality parameters
Element Path:
/DNASample/QualityCheckMethod
Images(link)
Core | Changed | Container | minOccurs: 0 | maxOccurs: 1 |
Container element for information on images of the DNA sample (e.g. agarose gel images)
Element Path:
/DNASample/Images
Content:
Image+
Comments:
changed documentation
Image(link)
Core | New | Container | minOccurs: 1 | maxOccurs: unbounded |
Container element for information on images of the DNA sample (e.g. agarose gel images)
Element Path:
/DNASample/Images/Image
Content:
FileURI?, GelVoltage?, GelConcentration?, GelDuration?, GelLadder?
FileURI(link)
Core | Changed | StringType | minOccurs: 0 | maxOccurs: 1 |
Link to an DNA sample image (e.g. agarose gel image)
Element Path:
/DNASample/Images/Image/FileURI
Comments:
no longer unbounded
GelVoltage(link)
Core | New | xs:string | minOccurs: 0 | maxOccurs: 1 |
Element Path:
/DNASample/Images/Image/GelVoltage
GelConcentration(link)
Core | New | xs:string | minOccurs: 0 | maxOccurs: 1 |
Element Path:
/DNASample/Images/Image/GelConcentration
GelDuration(link)
Core | New | xs:string | minOccurs: 0 | maxOccurs: 1 |
Element Path:
/DNASample/Images/Image/GelDuration
GelLadder(link)
Core | New | xs:string | minOccurs: 0 | maxOccurs: 1 |
Element Path:
/DNASample/Images/Image/GelLadder
Marker(link)
Core | Changed | xs:string | minOccurs: 0 | maxOccurs: 1 |
Marker, genetic locus or DNA fragment amplified by PCR (e.g. "CO1", "ITS")
Element Path:
/DNASample/Amplifications/Amplification
Comments:
changed element name, was
GeneticLocus
beforeAmplificationSuccess(link)
Core | New | xs:boolean | minOccurs: 0 | maxOccurs: 1 |
true/false or yes/no whether the ampliciation was sucessful in general
Element Path:
/DNASample/Amplifications/Amplification/AmplificationSuccess
AmplificationSuccessDetails(link)
Core | New | xs:string | minOccurs: 0 | maxOccurs: 1 |
details about the amplification, e.g. including why it has failed
Element Path:
/DNASample/Amplifications/Amplification/AmplificationSuccessDetails
AmplificationMethod(link)
Core | New | xs:string | minOccurs: 0 | maxOccurs: 1 |
Method used for amplification
Element Path:
/DNASample/Amplifications/Amplification/AmplificationMethod
AmplificationPrimer(link)
Core | New | Primer | minOccurs: 1 | maxOccurs: unbounded |
Container element for an individual amplification primer
Element Path:
/DNASample/Amplifications/Amplification/AmplificationPrimers/AmplificationPrimer
Content:
PrimerSequence?, PrimerName?, PrimerReferenceCitation?, PrimerReferenceLink?
Comments:
uses the generic element
Primer
CloningPrimers(link)
Core | New | Container | minOccurs: 1 | maxOccurs: unbounded |
Container element for cloning primers
Element Path:
/DNASample/Amplifications/Amplification/Sequencings/Sequencing/CloningPrimers
Content:
CloningPrimer+
CloningPrimer(link)
Core | New | Primer | minOccurs: 0 | maxOccurs: 1 |
Container element for an individual cloning primer
Element Path:
/DNASample/Amplifications/Amplification/Sequencings/Sequencing/CloningPrimers/CloningPrimer
Content:
PrimerSequence?, PrimerName?, PrimerReferenceCitation?, PrimerReferenceLink?
Comments:
uses the generic element
Primer
SequencingPrimer(link)
Core | Changed | Primer | minOccurs: 1 | maxOccurs: unbounded |
Container element for an individual sequencing primer
Element Path:
/DNASample/Amplifications/Amplification/Sequencings/Sequencing/SingleSequencings/SingleSequencing/SequencingPrimers/SequencingPrimer
Content:
PrimerSequence?, PrimerName?, PrimerReferenceCitation?, PrimerReferenceLink?
Comments:
uses the generic element
Primer
nowHaplotype(link)
Core | New | xs:string | minOccurs: 0 | maxOccurs: 1 |
Name of the haplotype
Element Path:
/DNASample/Amplifications/Amplification/Sequencings/Sequencing/Haplotype
GeneticAccessionNumber(link)
Core | Changed | xs:string | minOccurs: 0 | maxOccurs: 1 |
Definite number or ID under which the DNA sequence is deposited in a public database (e.g. GenBank accession number)
Element Path:
/DNASample/Amplifications/Amplification/Sequencings/Sequencing/GeneticAccessionNumber
Comments:
changed name of element
GeneticAccessionNumber-URI(link)
Core | Changed | xs:string | minOccurs: 0 | maxOccurs: 1 |
Link to the related record in a public database (e.g. link to a GenBank or EMBL record)
Element Path:
/DNASample/Amplifications/Amplification/Sequencings/Sequencing/GeneticAccessionNumber-URI
Comments:
changed name of element
BOLDProcessID(link)
Core | New | xs:string | minOccurs: 0 | maxOccurs: 1 |
Definite number or ID under which the DNA sequence is deposited in the BOLD database
Element Path:
/DNASample/Amplifications/Amplification/Sequencings/Sequencing/BOLDProcessID
Comments:
separated from the
GeneticAccessionNumber
element, no URI element required (only one BOLD instance)SequenceLength(link)
Core | New | xs:string | minOccurs: 0 | maxOccurs: 1 |
Length of the single sequence/read
Element Path:
/DNASample/Amplifications/Amplification/Sequencings/Sequencing/SingleSequencings/SingleSequencing/SequenceLength