Difference between revisions of "Task Force Document Library"

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The Global Genome Biodiversity Network in collaboration with the European, Middle Eastern and African Society for Biopreservation and Biobanking (ESBB) are developing a knowledge exchange platform for biobanks, researchers and institutions through an online document library. This resource will allow GGBN members and collaborators to perform full text searches, tag publications, and browse information in the following resource categories relevant to biodiversity biobanking: best practice, biobank governance, information and data management systems, standards for sharing samples, business models for biobanks, education and training tools, health and safety, regulation and legislation, research protocols, and curation protocols. A prototype of this platform was launched in July 2016 and is currently being tested by the community for development. Content gaps are being identified and additional use cases are being developed for testing. A prototype of this platform is available under https://library.ggbn.org/ To gain access or if you have any questions please send an email to [mailto:library@ggbn.org library@ggbn.org].
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=Program of Work=
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*Develop and strategically expand the GGBN Document Library for biodiversity biobanking
  
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'''The guide on how to use the GGBN Document Library can be found at: https://library.ggbn.org/share/s/5ptKXCYAR6OwII0mcoGjLQ'''
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=Current Activities=
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*Expand document library functionality, including platform upgrades, streamlining
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*Partner with [https://www.cryoarks.org/ CryoArks], [https://esbb.org/ ESBB], [https://www.darwintreeoflife.org/ DToL] and other GGBN partners to expand document library content
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*Spanish translation of Document Library General User Guide and expansion of Spanish-language content
  
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'''Technology:'''
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=Accomplishments=
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We are using Alfresco, an open source document management system which allows full text search, tagging, and versioning.
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*As of February 2021, the GGBN Document Library has over 700 documents
  
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'''Mission:'''
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=Related Resources=
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Development and expansion of an online knowledge exchange platform specific to biodiversity biobanking
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==GGBN Document Library Users==
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*Request a login: e-mail [mailto:library@ggbn.org library@ggbn.org]
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*Login page: https://library.ggbn.org/share/page/
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*[https://library.ggbn.org/share/s/5ptKXCYAR6OwII0mcoGjLQ General User Guide]
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*Suggest resources/submit feedback: email [mailto:library@ggbn.org library@ggbn.org]
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==Task Force Members==
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*[https://library.ggbn.org/share/s/Ks9uiwEqTouG-EFoXx3ntQ Category Managers Guide]
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*Login to [https://library.ggbn.org/share/page/ Task Force site]
  
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=Getting Involved=
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Email us at [mailto:library@ggbn.org library@ggbn.org] to:
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*Obtain a login for the Document Library
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*Join the Task Force and help curate a specific tag or category
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*Suggest additional resources for addition to the Document Library
  
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'''Goals'''
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=Current Members=
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Develop and strategically expand the GGBN Document Library
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==Task Force Chair==
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Raise awareness of ABS and the importance of genomic collections
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*Jackie Mackenzie-Dodds, Natural History Museum London
  
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'''Current Activities'''
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==Category Managers==
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Implement new GGBN tagging system
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*'''Biobank Management''' (including Governance, Business Models, Health and Safety)
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Continue to expand document library functionality
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**Jeremy deWaard, Centre for Biodiversity Genomics, University of Guelph
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Partner with CryoArks, ESBB and other GGBN partners to expand document library content
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*'''Curation Protocols''' (including specimen and sample field collection, sample preparation, shipping, laboratory curation and storage methods)
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**Animals: Kim Labuschagne, South African National Biodiversity Institute Biobank
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'''GGBN Document Library Category Managers:'''
 
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*Biobank Management (including Governance, Business Models, Health and Safety)
 
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**Jeremy deWaard, Centre for Biodiveristy Genomics, University of Guelph
 
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*Curation Protocols (including specimen and sample field collection, sample preparation, shipping, laboratory curation and storage methods)
 
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**Animals: Breda Zimkus, Museum of Comparative Zoology, Harvard
 
 
**Plants: Tim Fulcher, Royal Botanic Gardens Kew
 
**Plants: Tim Fulcher, Royal Botanic Gardens Kew
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**Microorganisms: TBD, library@ggbn.org
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**Microorganisms: [mailto:library@ggbn.org library@ggbn.org]
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*Education and Training Tools (including workshop documents and publications, interactive session protocols and technology)
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*'''Education and Training Tools''' (including workshop documents and publications, interactive session protocols and technology)
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**Heather Prestridge, Texas A&M
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**[mailto:library@ggbn.org library@ggbn.org]
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*GGBN Conferences (Conference documents archive)
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*'''GGBN Conferences''' (Conference documents archive)
 
**Katie Barker, National Museum of Natural History, Smithsonian Institution
 
**Katie Barker, National Museum of Natural History, Smithsonian Institution
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**Alysha Chadderdon, National Museum of Natural History, Smithsonian Institution
 
 
**Gabi Droege, Berlin Botanic Garden
 
**Gabi Droege, Berlin Botanic Garden
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*GGBN Information (GGBN-specific information and GGBN-produced materials)
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*'''GGBN Information''' (GGBN-specific information and GGBN-produced materials)
 
**Katie Barker, National Museum of Natural History, Smithsonian Institution
 
**Katie Barker, National Museum of Natural History, Smithsonian Institution
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**Alysha Chadderdon, National Museum of Natural History, Smithsonian Institution
 
 
**Gabi Droege, Berlin Botanic Garden
 
**Gabi Droege, Berlin Botanic Garden
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*Information and Data Management Systems (Data standards, data workflows, pipelines, portals, database interoperability)
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*'''Information and Data Management Systems''' (Data standards, data workflows, pipelines, portals, database interoperability)
 
**Muriel Rabone, Natural History Museum London
 
**Muriel Rabone, Natural History Museum London
 
**Gabi Droege, Berlin Botanic Garden
 
**Gabi Droege, Berlin Botanic Garden
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*Regulation and Legislation:
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*'''Regulation and Legislation''' (including publications regarding access to genetic resources and benefit sharing (ABS), Permit/PIC/MAT/MTA examples and templates, shipping regulations, and more):
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**ABS: Documents and publications regarding access to genetic resources and benefit sharing (ABS), including examples/templates for Permits/PIC/MAT/MTA/How To publications/case studies across the globe):
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**Kim Labuschagne, South African National Biodiversity Institute Biobank
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***TBD, library@ggbn.org
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*'''Research Protocols''' (including laboratory specimen and sample analysis: e.g. species-specific extraction, amplification, sequencing for fresh and archival/ancient material)
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**Other: including CITES/ Shipping e.g. IATA regulations: Commercial Invoice/Shipping Inventory/Import-Export documentation /Other regulations and tools* (*full list TBD):  
 
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***Jane Collins, KU-Leuven University
 
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*Research Protocols (including laboratory specimen and sample analysis: e.g. species-specific extraction, amplification, sequencing for fresh and archival/ancient material)
 
 
**Laura Forrest, Royal Botanic Garden Edinburgh
 
**Laura Forrest, Royal Botanic Garden Edinburgh
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*CryoArks Content (animal biobanking for conservation research)
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==Network Tag Managers==
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*'''[https://www.cryoarks.org/ CryoArks] Content''' (animal biobanking for conservation research)
 
**Kirsty Lloyd, Natural History Museum London
 
**Kirsty Lloyd, Natural History Museum London
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*'''[https://www.darwintreeoflife.org/ Darwin Tree of Life (DToL)] Content'''
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**Heather Allen, Natural History Museum London
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*'''[https://esbb.org/ ESBB] Content'''
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**Rosita Kammler, International Breast Cancer Study Group
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**Dominik Lermen, Fraunhofer Institute for Biomedical Engineering
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*'''[https://www.synthesys.info/ SYNTHESYS] Content'''
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**Andreas Plank, Botanic Garden and Botanical Museum Berlin
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**NA3.1: Carolina Corrales, Zoological Research Museum Alexander Koenig
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**JRA2: Peter Hollingsworth, Royal Botanic Garden Edinburgh
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==Spanish Content Managers==
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*Ana Lourdes Medrano, Universidad Autónoma de Aguascalientes
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*Gilberto Alejandro Ocampo Acosta, Universidad Autónoma de Aguascalientes
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*Luz Ochoa, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt

Latest revision as of 17:14, 30 July 2021

Program of Work

  • Develop and strategically expand the GGBN Document Library for biodiversity biobanking

Current Activities

  • Expand document library functionality, including platform upgrades, streamlining
  • Partner with CryoArks, ESBB, DToL and other GGBN partners to expand document library content
  • Spanish translation of Document Library General User Guide and expansion of Spanish-language content

Accomplishments

  • As of February 2021, the GGBN Document Library has over 700 documents

Related Resources

GGBN Document Library Users

Task Force Members

Getting Involved

Email us at library@ggbn.org to:

  • Obtain a login for the Document Library
  • Join the Task Force and help curate a specific tag or category
  • Suggest additional resources for addition to the Document Library

Current Members

Task Force Chair

  • Jackie Mackenzie-Dodds, Natural History Museum London

Category Managers

  • Biobank Management (including Governance, Business Models, Health and Safety)
    • Jeremy deWaard, Centre for Biodiversity Genomics, University of Guelph
  • Curation Protocols (including specimen and sample field collection, sample preparation, shipping, laboratory curation and storage methods)
    • Animals: Kim Labuschagne, South African National Biodiversity Institute Biobank
    • Plants: Tim Fulcher, Royal Botanic Gardens Kew
    • Microorganisms: library@ggbn.org
  • Education and Training Tools (including workshop documents and publications, interactive session protocols and technology)
  • GGBN Conferences (Conference documents archive)
    • Katie Barker, National Museum of Natural History, Smithsonian Institution
    • Gabi Droege, Berlin Botanic Garden
  • GGBN Information (GGBN-specific information and GGBN-produced materials)
    • Katie Barker, National Museum of Natural History, Smithsonian Institution
    • Gabi Droege, Berlin Botanic Garden
  • Information and Data Management Systems (Data standards, data workflows, pipelines, portals, database interoperability)
    • Muriel Rabone, Natural History Museum London
    • Gabi Droege, Berlin Botanic Garden
  • Regulation and Legislation (including publications regarding access to genetic resources and benefit sharing (ABS), Permit/PIC/MAT/MTA examples and templates, shipping regulations, and more):
    • Kim Labuschagne, South African National Biodiversity Institute Biobank
  • Research Protocols (including laboratory specimen and sample analysis: e.g. species-specific extraction, amplification, sequencing for fresh and archival/ancient material)
    • Laura Forrest, Royal Botanic Garden Edinburgh

Network Tag Managers

  • CryoArks Content (animal biobanking for conservation research)
    • Kirsty Lloyd, Natural History Museum London
  • Darwin Tree of Life (DToL) Content
    • Heather Allen, Natural History Museum London
  • ESBB Content
    • Rosita Kammler, International Breast Cancer Study Group
    • Dominik Lermen, Fraunhofer Institute for Biomedical Engineering
  • SYNTHESYS Content
    • Andreas Plank, Botanic Garden and Botanical Museum Berlin
    • NA3.1: Carolina Corrales, Zoological Research Museum Alexander Koenig
    • JRA2: Peter Hollingsworth, Royal Botanic Garden Edinburgh

Spanish Content Managers

  • Ana Lourdes Medrano, Universidad Autónoma de Aguascalientes
  • Gilberto Alejandro Ocampo Acosta, Universidad Autónoma de Aguascalientes
  • Luz Ochoa, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt
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