Revision as of 15:14, 14 July 2011

Entity-relation diagram of the DNA Module V2.0

Overview

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DNA extractions

ER diagram Package "DNA extractions"

Main package of the DNA Module, related to many other packages. The main table is dnabanknumbers with several related list tables. The table people is connected to the dna extractions via three IDs: ExtractionStaff, Provided_By and AmplificationStaff.

Main tables:
- dnabanknumbers
- people
List tables:
- dnatype
- relationdna_voucher
- tissue
- preservation
- extractionmethod
- purification
- degradation
- images
Related packages:
- Amplifications
- Locations Aliquots/stock
- Specimen cache
- Requests
- Molecular publications
- Log tables

Specimen data providers

ER diagram package “Specimen data providers”

List of all connected specimen data providers (GBIF compliant databases). More than one dataset per provider is possible. The required schema and provider software is recorded by ID_Schema. The Specimen Tool is predefined with ID_Dataset = '1'. The Wrapper urls of both the Specimen Tool and the DNA data are left empty until definition via the Configuration Tool.

Main table:
- dataset
Related packages:
Specimen cache
Specimen Tool

Specimen cache

ER diagram package “Specimen cache”

A few specimen parameters have to be recorded within the DNA Module database to enable search for exisiting taxa in the DNA database et cetera. The specimen data are recorded in four tables to get all available determinations and higher taxa. One specimen can be connected to several DNA extractions.

Main table:
- cachecollection
Related packages:
- Specimen data providers
- DNA extractions

Locations stock/aliquots

Molecular publications

Sequence data

Customer requests

Specimen Tool

DNA Bank Network

Users

Log tables

Kurze Einführung, worum gehts, Allgemeiner Aufbau

Table descriptions

Table: _log_aliquots

Table: _log_amplifications

Table: _log_cache

Table: _log_cachehigertaxa

Table: _log_cacheimages

Table: _log_cachetaxonidentified

Table: _log_sptoolcollections

Table: _log_sptoolecology

Table: _log_sptoolhighertaxon

Table: _log_sptoolimages

Table: _log_sptooltaxa

Table: abcdmetadata

Table: abcdmetadataspecimens

Table: aliquots

Table: aliquots_box

Table: aliquots_fridge

Table: aliquots_rack

Table: amplifications

Table: authors

Table: basisofrecordspecimen

Table: cachecollection

Table: cachehighertaxa

Table: cacheimages

Table: cachetaxonidentified

Table: continentorocean

Table: countrycontinent

Table: countryisocode

Table: dataset

Table: degradation

Table: dnabanknumbers

Table: dnatype

Table: extractionmethod

Table: fragment

Table: images

Table: journals

Table: location_stock

Table: people

Table: preservation

Table: primer

Table: provider

Table: publications

Table: publications_amplifications

Table: publications_authors

Table: purification

Table: relationdna_voucher

Table: request

Table: schemata

Table: seasandoceans

Table: sex

Table: specimentype

Table: sptoolassociatedunits

Table: sptoolcollection

Table: sptoolecology

Table: sptoolhighertaxon

Table: sptoolmultimedia

Table: sptooltaxa

Table: stock_box

Table: stock_fridge

Table: stock_rack

Table: tissue

Table: user

Table: usergroups

Table: usersettings

View descriptions

View: wrapper_view_amplifications

View: wrapper_view_dna

View: wrapper_view_providers

View: wrapper_view_publications_dna

View: wrapper_view_specimens

@@ Line 36: / Line 36: @@
 ===Specimen cache===
+[[File:DNA Module Package3 Specimen cache.jpg|thumb|300px|ER diagram package “Specimen cache”]]
+A few specimen parameters have to be recorded within the DNA Module database to enable search for exisiting taxa in the DNA database et cetera.
+The specimen data are recorded in four tables to get all available determinations and higher taxa. One specimen can be connected to several DNA extractions.
+*Main table:
+**cachecollection
+*Related packages:
+**Specimen data providers
+**DNA extractions
 ===Locations stock/aliquots===
 ===Molecular publications===

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