GGBN Amplification Vocabulary
Description: These terms have been developed for specific GGBN purposes but can be used in any other molecular context. The amplification vocabulary terms are specific to the aspects of amplification, sequencing, and genetic accession numbers. It also contains terms from MIxS. It does not cover single read information (see GGBN Single Read Vocabulary).
This is a collection within the GGBN Data Standard. It contains the following concepts:
By label: Amplification Date • Amplification Method • Amplification Staff • Amplification Success • Amplification Success Details • BOLD Process ID • Barcode Sequence • Consensus Sequence • Consensus Sequence Chromatogram URI • Consensus Sequence Length • Genetic Accession Number • Genetic Accession URI • Guanin-Cytosine content • Haplotype • Marker • Marker Accordance • Marker Subfragment • Primer Name • Primer Name (Forward) • Primer Name (Reverse) • Primer Reference Citation • Primer Reference Citation (Forward) • Primer Reference Citation (Reverse) • Primer Reference Link • Primer Reference Link (Forward) • Primer Reference Link (Reverse) • Primer Sequence • Primer Sequence (Forward) • Primer Sequence (Reverse) • Purification Method (DNA or Amplification) • adapters • mixs:annot source • mixs:assembly • mixs:chimera check • mixs:finishing strategy • mixs:mid • mixs:seq quality check • mixs:sop
By concept name: ggbn:amplificationDate • ggbn:amplificationMethod • ggbn:amplificationStaff • ggbn:amplificationSuccess • ggbn:amplificationSuccessDetails • ggbn:barcodeSequence • ggbn:BOLDProcessID • ggbn:GC-content • ggbn:consensusSequenceChromatogramFileURI • ggbn:consensusSequence • ggbn:consensusSequenceLength • ggbn:geneticAccessionNumber • ggbn:geneticAccessionURI • ggbn:haplotype • ggbn:marker • ggbn:markerAccordance • ggbn:markerSubfragment • ggbn:primerName • ggbn:primerNameForward • ggbn:primerNameReverse • ggbn:primerReferenceCitation • ggbn:primerReferenceCitationForward • ggbn:primerReferenceCitationReverse • ggbn:primerReferenceLink • ggbn:primerReferenceLinkForward • ggbn:primerReferenceLinkReverse • ggbn:primerSequence • ggbn:primerSequenceForward • ggbn:primerSequenceReverse • ggbn:purificationMethod • mixs:adapters • mixs:annot_source • mixs:assembly • mixs:chimera_check • mixs:finishing_strategy • mixs:mid • mixs:seq_quality_check • mixs:sop
GGBN Amplification Vocabulary has a sub-collection: