Difference between revisions of "Mandatory and recommended fields for sharing data with GGBN"
From GGBN Wiki
(→=Gathering and Identification of the voucher) |
|||
| Line 166: | Line 166: | ||
|} | |} | ||
| − | ==Gathering and Identification of the voucher= | + | ==Gathering and Identification of the voucher== |
{| border="1" width="60%" | {| border="1" width="60%" | ||
! width="120px" | Group | ! width="120px" | Group | ||
| Line 189: | Line 189: | ||
|- | |- | ||
|Gathering/Altitude | |Gathering/Altitude | ||
| − | |* | + | |*UpperValue |
| | | | ||
|e.g. 200 | |e.g. 200 | ||
Revision as of 19:48, 9 February 2012
Contents
Introduction
ABCD and ABCDDNA contain hundreds of elements. Some are mandatory. Further information about ABCDDNA and a complete Mapping example can be found here in the Wiki. The curator of the DNA Bank has to define the Metadata of the DNA Bank data first.
We have to differ between elements that are required to build a valid xml file, elements that are required for the DNA Bank Network, and further elements that are not essential. The following table contains only those elements required for providing your DNA data via the web portal of the DNA Bank Network.
Red labelling means required for building a valid xml file.
Asterisk (*) means mandatory for the DNA Bank Network.
Metadata of your DNA bank
| Group | Element | Remarks | Example |
|---|---|---|---|
| ContentContact | *Address | Complete Address of the responsible person | Botanic Garden and Botanical Museum Berlin-Dahlem, Freie Universität Berlin, Koenigin-Luise-Str. 6-8, 14195 Berlin, Germany |
| ContentContact | valid email address; will be used by the web portal for sending you annotations etc. | please use @ instead of masquerades like "[at]" | |
| ContentContact | *Name | Person, person team responsible for curation of your DNA Bank | Dr. Birgit Gemeinholzer |
| Description/Representation | *Details | Short text to describe the focus and number of samples in your DNA collection. It must include the following phrase: The DNA bank is part of the DNA Bank Network which was established in spring 2007. The network was initiated by GBIF Germany and provides a technically optimized DNA collection service facility for all biological research accessible via one central web portal. The network promotes deposition of well documented reference DNA samples after project completion or data publication from scientists of other universities and institutions. | The DNA bank of the Botanic Garden and Botanical Museum Berlin-Dahlem holds currently a collection of 8200 plant DNA and tissue samples growing constantly. Its core collection focuses on the flora of the Berlin and Brandenburg but it also preserves DNA from the Alps, the Mediterranean and the Altai Mountains. |
| Description/Representation | *@language | language of description | should be "en" as literal |
| Description/Representation | *Title | Short title that describes your DNA collection | DNA Bank of the Herbarium Berolinense |
| IPRStatements/Citation | *Text | Droege, G., Zetzsche, H. & Gemeinholzer, B. (Ed.) 2008 - (continuously updated): DNA samples of the DNA bank at the BGBM (Botanic Garden and Botanical Museum Berlin-Dahlem). | |
| IPRStatements/Citation | *@language | language of citation | should be "en" as literal |
| IPRStatements/Copyright | *Text | The copyright for any material created by the DNA bank of the BGBM is reserved. The duplication or use of information and data such as texts or images is only permitted with the indication of the source or with prior approval by the BGBM. | |
| IPRStatements/Copyright | *@language | language of copyright | should be "en" as literal |
| IPRStatements/TermsOfUse | *Text | The use of the data is allowed only for non-profit scientific use and for non-profit nature conservation purpose. The data bases or part of it may only be used or copied by the written permission from the legal owner. | |
| IPRStatements/TermsOfUse | @language | language of the terms of use | should be "en" as literal |
| IconURI | *complete url path to the logo of your institution | ||
| Owner | *Address | Complete Address of the institution that owns the DNA bank samples and data | |
| Owner/Representation | *Text | name of your institution | Botanic Garden an Botanical Museum Berlin-Dahlem (Freie Universität Berlin) |
| Owner | *URL | path to website of your institution | http://www.bgbm.org |
| RevisionData | DateModified | date of last modification of your data | |
| TechnicalContact | *Address | Complete Address of the responsible person | Botanic Garden and Botanical Museum Berlin-Dahlem, Freie Universität Berlin, Koenigin-Luise-Str. 6-8, 14195 Berlin, Germany |
| TechnichalContact | valid email address; will be used by the web portal for sending you annotations etc. | please use @ instead of masquerades like "[at]" | |
| TechnicalContact | *Name | Person, person team responsible for technical issues of your database | Gabriele Droege |
| *RecordBasis | this value must be part of the ABCD vocabulary | must be "OtherSpecimen" | |
| *SourceID | short description of relevant collection | should be "DNA Bank" | |
| *SourceInstitutionID | short name/abbreviation of relevant institution | BGBM |
Related Specimen Data
The voucher identifier
All specimen voucher information must be available via a GBIF compliant database! Both DiGIR and BioCASe specimen providers are possibe!
| Group | Element | Remarks | Example |
|---|---|---|---|
| Associations/UnitAssociation | *AssociatedUnitID | the UnitID or CatalogueNumber used for GBIF | e.g. the barcode number of your specimens |
| Associations/UnitAssociation | *AssociatedUnitSourceInstitutionID | the SourceInstitutionID or InstitutionCode used for GBIF | e.g. the acronym of your institution |
| Associations/UnitAssociation | *AssociatedUnitSourceID | the SourceID or CollectionCode used for GBIF | e.g. the name of the collection where the specimen belongs to, e.g. "Birds" |
| Associations/UnitAssociation | *AssociationType | the Relation between the DNA and the voucher | e.g. "DNA and voucher from same individual" |
| Associations/UnitAssociation | *Comment | the wrapper url of the voucher record | e.g. "http://nhb-acsmith2.si.edu/emuwebvzbirdsweb/webservices/digir.php" |
Gathering and Identification of the voucher
| Group | Element | Remarks | Example |
|---|---|---|---|
| *CollectorsFieldNumber | the number the collector gave to the specimen in the field, often used in Botany but not in Zoology; map it if you have content | e.g. 765/10 | |
| Gathering/Agents/GatheringAgent | *FullName | the Collector or Collector Team | e.g. Scholz & Sipman |
| Gathering/Altitude | *LowerValue | if you have both the lower and upper value in different columns map both field, if not map LowerValue only | e.g. 100 |
| Gathering/Altitude | *UpperValue | e.g. 200 | |
| Gathering/Altitude | *Unit | e.g. m |
